SNP Profiles of CRU 156 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AC	CC	CC	GG	TT	TT	CC	TT	GG	TT	AG	TT	AA
1._GC-01-131-7-08	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
2._GC-01-131-7-08	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
3._GC-01-131-7-08	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
4._GC-01-131-7-08	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
5._GC-01-131-7-08	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
6._CRU_156	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
7._CRU_156	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
8._CRU_156	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
9._CRU_156	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
10._CRU_156	_	_	_	_	_	_	_	AA	_	_	_	AG	_	_
11._RUQ_880	_	_	_	_	_	_	_	AA	_	_	_	GG	_	_
12._RUQ_880	_	_	_	_	_	_	_	AA	_	_	_	GG	_	_
13._CRU_156	_	_	_	_	_	_	_	AC	_	_	_	AA	_	_
14._RUQ_880	_	_	_	_	_	_	_	AA	_	_	_	GG	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AC	CC	AC	CT	CC	AA	CC	AA	CC	CC	TT	AG	CG
1._GC-01-131-7-08	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
2._GC-01-131-7-08	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
3._GC-01-131-7-08	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
4._GC-01-131-7-08	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
5._GC-01-131-7-08	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
6._CRU_156	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
7._CRU_156	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
8._CRU_156	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
9._CRU_156	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
10._CRU_156	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
11._RUQ_880	_	_	_	_	_	AA	_	CC	_	CC	_	_	_	_
12._RUQ_880	GG	_	_	_	_	AA	_	CC	_	CC	CC	_	_	_
13._CRU_156	_	_	_	_	_	AC	_	GG	_	AC	_	_	_	_
14._RUQ_880	GG	_	_	_	_	AA	_	CC	_	CC	GG	_	_	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	CC	CC	GT	GG	TT	CT	CC	AA	TT	GG	AG	CG	AG
1._GC-01-131-7-08	AG	_	CC	GG	GG	_	_	AC	_	GG	CC	GG	_	AA
2._GC-01-131-7-08	AG	_	CC	GG	GG	_	_	AC	_	GG	CC	GG	_	AA
3._GC-01-131-7-08	AG	_	CC	GG	GG	_	_	AC	_	GG	CC	GG	_	AA
4._GC-01-131-7-08	AG	_	CC	GG	GG	_	_	AC	_	GG	CC	GG	_	AA
5._GC-01-131-7-08	AG	_	CC	GG	GG	_	_	AC	_	GG	CC	GG	_	AA
6._CRU_156	AG	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
7._CRU_156	AG	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
8._CRU_156	AG	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
9._CRU_156	AG	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
10._CRU_156	AG	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
11._RUQ_880	AA	_	_	GG	_	_	_	_	_	_	GG	_	_	AG
12._RUQ_880	_	_	CC	GG	AA	_	_	AA	_	_	GG	-	_	AA
13._CRU_156	AG	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
14._RUQ_880	_	_	_	CC	AA	_	_	AA	_	CC	CC	GG	_	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	TT	AT	CT	AA	TT	TT	GT	AC	GT	TT	TT	GG	GG
1._GC-01-131-7-08	TT	_	_	_	AG	_	CC	_	_	GT	_	_	_	_
2._GC-01-131-7-08	TT	_	_	_	AG	_	CC	_	_	GT	_	_	_	_
3._GC-01-131-7-08	TT	_	_	_	AG	_	CC	_	_	GT	_	_	_	_
4._GC-01-131-7-08	TT	_	_	_	AG	_	CC	_	_	GT	_	_	_	_
5._GC-01-131-7-08	TT	_	_	_	AG	_	CC	_	_	GT	_	_	_	_
6._CRU_156	_	_	_	_	AG	_	CC	_	_	GT	_	_	_	_
7._CRU_156	_	_	_	_	AG	_	CC	_	_	GT	_	_	_	_
8._CRU_156	_	_	_	_	AG	_	CC	_	_	GT	_	_	_	_
9._CRU_156	_	_	_	_	AG	_	CC	_	_	GT	_	_	_	_
10._CRU_156	_	_	_	_	AG	_	CC	_	_	GT	_	_	_	_
11._RUQ_880	_	_	_	_	GG	_	CC	_	_	TT	_	_	_	_
12._RUQ_880	CC	_	_	_	_	_	_	_	_	TT	_	_	_	_
13._CRU_156	_	_	_	_	GG	_	_	_	_	GT	_	_	_	_
14._RUQ_880	_	_	_	_	GG	_	_	_	_	AA	_	_	_	_

	57	58	59
_Input profile	CG	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-01-131-7-08	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._GC-01-131-7-08	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-01-131-7-08	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-01-131-7-08	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-01-131-7-08	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._CRU_156	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._CRU_156	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._CRU_156	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._CRU_156	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._CRU_156	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._RUQ_880	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._RUQ_880	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._CRU_156	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._RUQ_880	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: CRU_156 RUQ_880

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._CRU_156 GC-01-131-7-08

64.3 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

2._CRU_156 GC-01-131-7-08

64.3 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

3._CRU_156 GC-01-131-7-08

64.3 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

4._CRU_156 GC-01-131-7-08

64.3 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

5._CRU_156 GC-01-131-7-08

64.3 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

6._CRU_156

57.7 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 6

Dapeng Zhang, 2016

7._CRU_156

57.7 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 5

Dapeng Zhang, 2016

8._CRU_156

57.7 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 3

Dapeng Zhang, 2016

9._CRU_156

57.7 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 2

Dapeng Zhang, 2016

10._CRU_156

57.7 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

11._CRU_156 RUQ_880

53.8 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

12._CRU_156 RUQ_880

50 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

13._CRU_156

45.8 %
12 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 1 A X2 Y1

Dapeng Zhang, 2016

14._CRU_156 RUQ_880

26.5 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP33	4	TcSNP49	5	TcSNP52
6	TcSNP131	7	TcSNP143	8	TcSNP144	9	TcSNP176	10	TcSNP189
11	TcSNP194	12	TcSNP230	13	TcSNP290	14	TcSNP305	15	TcSNP329
16	TcSNP363	17	TcSNP421	18	TcSNP519	19	TcSNP522	20	TcSNP529
21	TcSNP546	22	TcSNP577	23	TcSNP589	24	TcSNP591	25	TcSNP602
26	TcSNP640	27	TcSNP642	28	TcSNP644	29	TcSNP645	30	TcSNP660
31	TcSNP702	32	TcSNP723	33	TcSNP731	34	TcSNP739	35	TcSNP800
36	TcSNP823	37	TcSNP835	38	TcSNP836	39	TcSNP872	40	TcSNP899
41	TcSNP945	42	TcSNP998	43	TcSNP999	44	TcSNP1010	45	TcSNP1019
46	TcSNP1053	47	TcSNP1062	48	TcSNP1112	49	TcSNP1144	50	TcSNP1205
51	TcSNP1230	52	TcSNP1253	53	TcSNP1275	54	TcSNP1293	55	TcSNP1401
56	TcSNP1404	57	TcSNP1458	58	TcSNP1524	59	TcSNP1527